My bench is layered, too. I sorta just add-hocked it and added bits over time.
I have a 2'2" x 6' main work surface, which was the original bench. Then on top of that I had a 8" deep hutch.
Then I added a depth extension, which is a 7" x 6' wing which is raised 1 1/2" over the main work surface. I moved my hutch over this extension. So now I have about 2' 9" x 6' work surface, the back 7" of which is raised.
Then I moved and gained more depth and width in my lab. I built a 8" x 8' free standing table that sits directly behind my bench, proper. This is about 3 1/2" taller than the bench extension. And I moved my hutch and my computer monitor to this table. So I have 3 different heights/tiers to my bench: 0", +1.5", +5". The air gaps between the tiers provide place to route wires and/or dangle probes, etc. E.g, my PSU sits on the tallest tier in the back, but the output cords run down under the 7" extension to pop out at the back of my 2'2" main work surface, closer to where I need it. And I have a lot of USB cables and other stuff also set in holders between the main bench and the 7" riser. I don't plug my scope probes in/out when I need them. I just left them dangle between the bench proper and the back extension table.
I still feel like the equipment should almost be 2' back from the work surface and raised slightly, like 8" off of the surface.
My scope and PSU are now sitting on the hutch on the extension table, which is about 2'9" behind the front edge of my work bench. How high depends on how far you can reach, I guess. I have basically 3 shelves on my hutch, including the top, which is about 5' 6" high. My PSU is on the floor level, so 5" higher than my bench. My scope is on the first shelf, a little over a foot above the bench surface. I have to stand up to twiddle with my scope controls. But this works out fine for me. If I need to, I can clear space and set equipment closer at hand. So, yeah, basically I agree with your assessment. Test equipment up and away. This keeps the displays and controls visible/accessible with stuff in front of it, and it keeps the probes out of your way. Soldering equipment front and right, to keep the cords away.