An isolation transformer, will prevent *ANY* upstream RCBO tripping (short of primary insulation breakdown) and if you ground its secondary side neutral, you can use RCBO protection down stream of it as-if it was an independent supply from the utility co. or a generator etc. Of course that removes the isolation 'safety' if you touch a single conductor, but IMHO 'safety' that doesn't trip anything when you touch one conductor then electrocutes you when you touch the other one is no safety at all.
There are considerable advantages in running an isolation transformer for your bench like this. Stray leakage currents all return via the local ground-neutral bond on the secondary side, and you can be sure the neutral is near ground potential, and if you add a heavy duty mains rated bidirectional TVS diode across the primary, the supply on the secondary side will be a lot cleaner. Also , if you use separate secondary side RCBOs for bench lighting, test equipment, IT equipment and mains sockets used for devices under test, a D.U.T with a ground fault wont trip more than the one RCBO, wont cut power on stuff that should be shut down cleanly and wont cause a safety issue by killing the room and bench lighting.
To find the intermittent fault without removing the 'master' RCBO, you'll need to get a pair of RCDs/RCBOs with guaranteed discrimination, one with a slower time characteristic as the master and the other faster one you can put on the suspect circuit. The other option would be to gut the old RCBO for its balanced current sensing transformer, and use it to build an isolated residual current sensor you can connect to a data logger, and put in series with both poles of each suspect circuit in turn.
If you are in N.I. you will probably fall foul of the building regs part 'P' competent person requirements, and a full reinspection would be needed on anything building wiring etc. you've worked on (and always work as if the most pissed off bureaucratic inspector possible has to pass the work). Therefore this is a 'purely theoretical exercise' for any part of the above that cant be implemented by plugging in to an existing 13A socket, and I do hope your posting history and profile are anonymous enough to protect your real identity and fine location!