Wait, are you saying that the USB port is broken?
NO. Read what he has said again.
He is saying that when you make a short circuit on a device powered from an USB port (like your Nano), the USB hub (either the one on your desk or the one in the PC) will detect that and turn the affected USB port off. It is a protection so that nothing else gets destroyed due to a faulty device, such as your computer's motherboard.
That is why your Windows made that *ding* sound - the hub has disconnected your device because it was overloading the USB port. The disabled port will usually come back once you remove the offending device - test with e.g. a known good USB stick. If not, then after you unplug/replug the hub to the PC (if it is an external hub) or after a reboot (if it is an internal one). If it doesn't come back even after power cycling the PC, then you have likely fried it, I am afraid.
You are actually lucky - not all PCs have this functionality. On some the PC power supply will turn the entire computer off because it detects a short circuit on the 5V rail. And some others will happily let you destroy the motherboard by burning out the USB hub integrated in the CPU chipset (southbridge) when you cause a short circuit. Both are poor design but I have encountered both cases - the first one usually in a normal desktop PC and the second one in laptops.
So, as a corrolary, if you want to be safe and make sure your $10 Arduino doesn't smoke your $1000 computer, make sure that:
a) No "tinkering" while the thing is plugged in, short is easy to make and could end up expensive
b) Better - use a powered external hub between the PC and the Arduino. A $10 hub is much cheaper to replace than $200 motherboard should the inevitable mistake happen.
c) Best - if you are tinkering with higher voltages than 5V - e.g. 12V for motors and such, use an USB isolator. You can get some cheap ones online, they were mentioned here in the forum too. Those are plenty good for Arduinos. PCs definitely
do not like having 12V shortcircuited into a USB port and something will blow up. My colleague has destroyed his laptop exactly like this - he was tinkering with some stepper motors driven from an Arduino and 12V from the motor supply somehow got into the USB lines.
And re shorting that diode causing a disconnect - that looks like that not only the diode is dead. There is very likely a short circuit on the Arduino's side of the diode, basically anything connected to the +5V rail in that schematics could be bad and causing a short. That is what @sleemanj is asking you to measure.
It is probably cheaper to buy a new Nano but it would be a very educational experience for you trying to reason your way about the board and finding that damaged component(s).