Via's have smaller drill holes than standard through hole components, and when using the PCB program they look different from the larger through hole pads.
Also, if you turn on the silk screen and solder mask layers you can see those are nearby to/attached to pads, but not the vias.
The default renderer (F9) makes the pads and vias look similar except for the drill size. However, if you use the OpenGL or Cairo renderer (F11 or F12) then the vias look very different from the pads.