Now to address your question, do not discharge from a partial string of series connected Li-ion batteries, unless the power is very low, and you have an active bidirectional BMS.
There is nothing wrong with discharging one or two cells in a 3 cell pack via the balance lead. (Or 1, 2, 3 cells in a 4 series pack).
As long as you don't put the pack into service again until the cells have been re-balanced with a proper balancing charger. I wouldn't trust a BMS to do this, you need at least a hobby grade balancer charger.
They may be frowned on for various reasons, but a Turnigy Accucell 6 set to "balance charge" will charge individual cells at about 0.1A until they are within about 100mV before it ramps up the charge current. Thus if you use 1 cell from the pack to run a 3.7V device and bring that cell down to 3V, giving a pack voltage of 3V, 4.2V, 4.2V the charger will effectively charge the 3V cell up to 4.1V before kicking off the charge properly.
Unless you can confirm this behaviour of the charger in advance I would not attempt this however.
So in the OP's use case, the pack is in service, it isn't at all advised.