You have a linear state space model defined in the standard format:
dx/dt=Ax+Bu
y=Cx+Du
x is the state vector of your system and dx/dt is the derivative of that, in your case you have 3 states. u is your input (or control) vector, y is your system ouput. A, B , C and D are matrices.
You can create this dynamic system model in matlab using the ss fucntion:
sys = ss(A,B,C,D);
After that, use sys with any of the Matlab linear system analysis tools, for example:
bode(sys); %Plot the bode diagrams
or plotting the step response for each input:
step(sys);