I don't have a spare pci-e motherboard, so cant check it for you.
Can you measure the 12V line on the videocard while it's plugged in and running (or should be running)
You may find there's 12V present at that point, in which case the 12V is fine and must be switched.
But if its still 0V then yeah, it's definitely possible the 12v tracks got cooked, the current is pretty high.