Hi,
I did recently calculations for these capacitors. You need to be aware that the capacitors have very little energy stored in them. I mean these big cells have less energy than a AA battery, and fraction of a similar sized Lithium battery. Probably 50m is a good estimate, but calculate the power.
You should be using a buck boost if you need to have the voltage below or above the capacitor voltage. Since your output voltage is going to be 12V or 24V (how much power do you need for the motor?), you need a boost converter, not buck-boost.
There should be several demo boards which are available from the manufacturers. It is not rude to ask them to send you it for free. If you are a student, or your work goes into publication, I'm quite sure they help you. Otherwise they cost around 50-100 Euros/USD/GBPs.
Same goes for the motor controller. Texas Instruments claims that they have brushless controllers, which you can get spinning in 5 minutes.
And just for the 'mericans: A 10F capacitor contains half the amount of energy of a 9mm bullet, as the Dicovery channel would say.