I too faced those problems on my old laptop that did not have a dedicated graphics card, but my new laptop, which has dedicated 2GB of graphics memory and I don't see them anymore.
So, most probably it is due to the rendering limitation of the graphics card and not a software problem. Try opening the pdf files in a different software, even google chrome comes handy at times (just paste the file path in place where you enter url).
Hope that was useful.