More bizzare behavior from them. I just got contacted by spammer from AllPcb over Skype, so I asked for clarification on this subject. And basically got confirmation that black mask is the source of the problem. Ok, fine.
So I decided to submit the same order to AllPcb, just to check it out. First of all, system said that I have no NC dril info, which is totally not true, since it was the same exact archive I submitted earlier to PcbWay, and it does contain *.xln file.
Ok, minor issue, skipped that, and manual verification process went fine.
But then a bait and switch happened, and apparently even with green masks, those bridges are extra, and $5 turned into $13+.