The 1/f noise of the integrator and input amplifier limits the usefulness of very long integration times. For this reason they choose to not provide real 100 PLC integration, but use 10 PLC signal and 10 PLC zero followed by averaging instead. This gives auto-zero function and suppresses 1/f noise below about 2.5 Hz.
Using 10 times a 10 PLC integration without a zero measurement in between would not be effective in suppressing 1/f noise, as there is no analog zero function (like in the 3457) . So from a certain integration time one expects lower noise if AZ mode is used, even though half the time is lost to the zero phase. The exact turn over would depend on signal noise.
The downside of averaging short integration times is that there is more time lost to the rundown and there is more noise from the rundown part. For the HP input design, faster AZ cycles could also increase input bias. So there is a kind of optimum - that seems to be around 10 PLC for the 3458. Modern DMMs like the Keithley DMM7510 seem to use even faster (e.g. 3 PLC) switching between signal and zero.
I am not sure how the aperture mode is realized, but a would assume it should be just a different way of setting PLC setting.