Here's my info on the signal level from the Cesium Tube test point. My thought was that since yours was hopefully undisturbed, I could adjust my level to equal yours. Since I now have your info, I decided to play with mine.
If I'm reading yours correctly, your baseline is -100 mv, your jumps are plus and minus 50 mv from the baseline, the spikes peak at -250 mv, and the noise level is 200 mv p-p.
First, the sense of the pot is backwards. Clockwise decreases the level, CCW increases the level. If I adjust mine for a 100 mv baseline, my jumps are -75 mv, +25, +50, and +75 mv. (!), the spikes peak at -175 mv, and the noise level is only 50 mv p-p. If I use the 20 MHz bandwidth limit, the noise level drops to 30 mv p-p. Nothing else changes. I often have to use the BW Limit because there's a local FM station that regularly shows up on my scope.
Adjusting the baseline more negative than ~-200 mv causes errors 02, 07, and loss of lock. Adjusting the level at all changes the Ramsey level which changes everything else. There's a slow servo (many minutes) that tries to return the Ramsey Level to 2500.
I had to go old school to get these pictures. The vertical scale is 50 mv / Div. Horizontal is 10 ms / Div. The 20 MHz bandwidth limit is engaged. The baseline is -100 mv. One of these days I've got to get me one of them new-fangled digital oscilloscopes.
The problem is that this ornery old HP 1744A analog storage scope just won't die and give me an excuse! It's over 30 years old for crap sake! What do I have to do, drive a stake through its heart?
I'm not sure what this tells us, if anything. Is your tube on its last legs? Is there a subtle fault in your unit causing higher noise levels? Yours is serial #02350, mine is #01067. Mine has that mezzanine board, but yours likely has those circuit changes already rolled into the main board. Even though yours has more noise, you're getting better StdDev values than I am. Do I have a noisy circuit in my unit? You're seeing numbers in the 130 - 140 range while I'm getting 170 - 180 although it seems like that number changes everytime I run the unit. Now that I've got the level set I'll have to see if it stabilizes. Maybe there's a sweet spot for that level adjustment.
Ed