Must say your query is not quite clear. You talk about the serial number, then the chip ID...
As we stated, both the serial number and the PID/VID can be freely programmed. (Changing the PID/VID will require that you also modify the drivers, the .inf file on Windows, but let's assume you got that covered since you want to "copy" what's inside another chip.)
The "chip ID" is another beast entirely. See:
http://www.ftdichip.com/Support/SoftwareExamples/FTDIChip-ID.htmAs you can see, this is read-only and can't be reprogrammed. Makes sense since it's basically usable as a safety feature.
I may be paranoid but it may look like you're trying to clone some kind of licensing USB dongle, which is probably not very legal. *cough*