Bootstrap capacitors are unlikely to produce much sound, because the ripple voltage should be small. This may give you some clue what to do, if they aren't.
It is true, the Piezoelectric effect is symmetrical, so that mechanical strain induces voltage, and vice versa.
Inductors often produce sound as well, for analogous reasons, though this time the effect is magnetostriction, which doesn't lead to as much microphonic behavior because it is a square-law effect.
Tim