I have not seriously analyzed anything, but what stands out to me is that the TPS converter circuit may not be capable of dealing with that huge capacitor on the front-end of your application circuit. There is a .03 ohm sense resistor measuring current, which probably is set up for a low output current. The inrush on the an 8200uf cap is pretty huge which would have the TPS going into fault and skipping PWM pulses to protect itself.