Small updates, here what I did :
- Single 907 iron used at both controllers to ensure identical thermal load.
- Both set at same temperature point.
- Checked tip's temperature with thermal probe at the tip point once the red led just turned off (means it reached temperature set point).
- Tested solder at few very similar spots at pcb, which have similar thermal mass.
- Watch at the kill-a-watt during tip re-heating up and soldering.
Conclusion, nothing significantly different either at tip temperature, power consumption, soldering tip heat recovery speed and also controller's transformer temperatures as I opened them up both when testing these.
Guess its nothing to worry about, thanks guys.