I see. Having blown or crippled inputs in the past, I tend to go a bit overboard in input protection/shielding. The LCD is the largest non-shielded part of the oscilloscope, therefore it is probably the most affected by EMI surges. Under certain circumstances I see this happening in my Rigol DS4014 as well.
I think the USB (and perhaps a keyboard) are your PC's "antennas" that capture all EMI spikes. Tie these with thinner shielded cables (the norm these days) and you probably get the most susceptible part of your PC.
There's nothing wrong with being overly safe. You may have seen my spark gaps and diode clamps that I use from time to time when I play with high voltages. I have been lucky that I have never damaged the front end of a scope. Not like I haven't put them at risk!
My old LeCroy front end actually has a battery in it that is used for part of the input protection when the scope is powered down. The WR will open the connector and ground the ADC, which is more what I would expect .
They make a transparent film for EMI that can be placed over something like an LCD. I wonder if the more modern industrial displays don't have some sort of layer on the glass.
Line cord and Ethernet cables as well. The unshielded Ethernet is fairly robust. That USB with it's common mode problems, not so much. Most of the USB devices I have will reset or hang when I play with the ignitions.