For some components that aren't available in the Altium builtin libraries, like the ADc and the op-amps, and voltage references that I'm using I have created a PcbLib and SchLib files that have footprints and the schematic parts and all those work perfectly and I even learned how to add .step 3d models to them.
The res1 and cap pol1 are from the Miscellaneous Devices that comes with Altium, I haven't designed them.
You you say mess with the libraries, do you refer to alter the Altium ones, or when making a personnal library?
The strange thing is that the components that fail were made by Altium and not by me, but there is something fishy with the LM2576 or with some other thing, because I cant attach anything to the net that connects the pin 4 to the inductor.