The CN0359 can be connected to either 2, 3 or 4 wire sensors. The manual details the connections for each situation.
https://www.mouser.com/datasheet/2/609/CN0359-586926.pdfWhile it is not an optimum method, it looks like you will need to make or purchase a wire to BNC cable. With a PT1000 the extra resistance will not hurt the accuracy as much as with a PT100. You can do some compensation via the software. If you are concerned about accuracy you need to change to a 3 or 4 wire sensor.
I have two CN0359's and installed them in a case with banana jacks for my four wire sensors.
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