Well, I didn't kill anything and it works. I didn't bother with the first indicator LED like in the original example because I just wanted to see if it works and I ran out of room.
I built it on one of the tiny little breadboards I got yesterday from China (just to make it more challenging:) )
I connected the unused SET2, RESET2, DATA2 and CLOCK2 inputs on the other side of the 4013 to ground.
CLOCK2 is considered an input just like the others right?
I used a 74c14 to create the pulses because it's so simple. At least that one doesn't need it's inputs connected to Ground considering how Schmitt Triggers aren't sensitive to noise.
I guess if I would've used a 555 it would have given me the room for another transistor and the other LED.

The LEDs aren't a big deal to me anyway because I connected it to my oscilloscope and the Flip-Flop was outputting exactly half the frequency as the Schmitt Trigger which was the whole point of this experiment for me.
I wanted to build something that outputs a sound exactly one octave down from the signal you put into it.