Backlink for those curious,
https://electronics.stackexchange.com/questions/647769/elliptic-filter-implementation-deviates-from-the-design-and-simulationAt least, it sounds like the same question.
A good idea is to find models for all components, as well as you can; and tweak the SPICE model until it matches your observations. The problem with inductors of that type is they probably have a low SRF so you're dealing with not just equivalent R and C but higher order (series resonant or other TL like effects) modes too. And power inductors, if they have models or characteristics at all, likely don't show those higher modes at all. (For example, Coilcraft parts typically end just before or just after the first (parallel mode) SRF.)
Like, I made this filter,

Left side is a VCO, the right 10k 1/4W axial resistor is R8 and so on to the output at the right. So it's filtering the VCO output.
Equivalent circuit,

with design response,

or zoomed out,

Notice that copper is removed around L2 and L3, and gimmicks have been added (bent wires, bits of copper clad). C4 is the varicap.
C6-C2-C5 is an unavoidable capacitor divider, necessary to get the lowpass edge but the stray capacitance (along with the inductors' capacitances) causes an impedance transformation. In this case that's helpful, because Q1 output impedance is quite high, and it's just signal level so I can get a bit more level out that way. (The impedance at VC1 is, err what was it, a kohm, or more like 10? I forget.) The impedance at Q2 base is fairly low (50 or 500 ohms? I forget, again); it's also adjustable by R13, if you don't mind the change in output gain as well).
I don't have a proper spectrum of it but this was the amplitude while sweeping the VCO over its range. So the axis is nonlinear, but you can see the peaks and relative flatness:

Hmm, that must've been before I got my spec... circa 2017. Hmm no, I got that 2015, why didn't I plot it that way?... :shrug:
Anyway, as you might guess, this model is quite a bit different from what you'd have designed normally. This is at 100MHz so of course RF type inductors are used (SMT chip air core) and their behavior is pretty simple, but at somewhat lower frequencies you'll still want to use similar types -- air core is still suitable (give or take Q, you might be looking at needing quite high Q here) or you might use ferrite or powder types, usually still in single layer windings, chip style.
Tim