Okay, I have a final question. What happens on a atomic scale when you put 2 batteries in series? What happens to the point where the 2 batteries meet, there shouldn't be electron flow right? I'm just so confused about this.
The traditional way of resolving this question is to separate electricity into two kinds: "static electricity" and "flowing electricity".
In electronic circuit design and analysis we normally only care about flowing electricity, and for electricity to flow it requires a circuit (a circuit is a closed loop that you can trace round and get back to the same starting point).
So if you put two batteries in series but leave the other ends unconnected there is no circuit. Since there is no circuit, there is for all practical purposes no flow of electricity. So the answer to what happens is essentially, "nothing happens". There is no electron flow that can be measured by normal instruments, nor that makes any material difference to anything nearby.
The best way to avoid being confused by this is to do what every good engineer does and make simplifying assumptions. We restrict our view of the world only to those things that concern the matter at hand and we ignore those things that we don't need to worry about.
It's like if we are driving a car. We care about the controls of the car and how the car responds to our actions. We don't need to care about how the engine works internally, as long as it is going. Knowing how an internal combustion engine works is not part of successfully driving a car from home to work. In our mind we automatically know this and we don't worry about it.
So it is with electricity and electronics. There needs to be a circuit for something to happen. If there is no circuit nothing is going to happen and we can ignore anything after that.
(Of course someone might tell me that there are exceptions and that this is an oversimplification, but IMHO the exceptions get more into the realm of physics than of electronics. And electrostatic discharge or ESD can be a bother with sensitive components, but this is more about workplace hygiene than about circuit design.)