There are three things that could be happening.
1. Peltier devices work by reversing time within the junction, allowing heat to flow in the reversed direction. If you accidentally cross the reverse time vector with the real time vector (don't cross the beams !!!!), you can get a time-space discontinuity across the devices sending the fans each side into parallel universes. All that remains are two useless virtual fans. A Flux Capacitor would solve the problem - I just can't find the design details anywhere.
2. The protection fuse has blown on the hi-current range of the multimeter.
3. When you are trying to test the total current, somehow you are not correctly completing the circuit.
I am not sure all these solutions are likely, so it just leaves the obvious one.
I hope you can get those fans back.