Oh, I think maybe I understand what you are trying to do.
Yes, you can try to use the Math>Filter function, Low Pass filter, with a suitable cutoff frequency. The DS1054z low-pass filter display behaviour, and available cutoff frequency, strongly depend on the Horizontal Scale setting of the timebase, so you may need to play around with it for a while to get a suitable display.
As far as amplitude accuracy... well, just change the Horizontal Scale and see what happens to the Math trace.