While tinkering with the resistor divider from the voltage sensing circuit I noticed that when the voltage on the output rail gets bigger than what the supply is set to provide, instability starts, e.g. the voltage drops randomly. Gotta read the code, this might be a software quirk or even some kind of protection. This also explains the instability when powering the motor (which raises the output voltage with those spikes).
I'll keep searching for a way to prevent the voltage feeding back into the loop. For starters I'll borrow the MOSFET + zener protection from amspire. Hopefully I'm not beating a dead horse

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It could be numerous things: perhaps the surge when the motor started or the noise from the motor interfered with the power supply?
You could try better RF filtering on the output of the PSU.
Indeed, the motor is creating voltage spikes that make their way back in the supply via the ADC that is used for sensing voltage.
Maybe check their latest firmware versions to start with?
I just installed the latest firmware, but it doesn't change anything. Most likely a hardware problem.
that's not a power supply ... that is a DISASTER !
Heh, in a way it is, but it's good for beginners (e.g. as a first MCU project). I'd dare say it's the DSO138 of power supplies.