As everyone else says, probably not the controller. Stick the board down with thin double-sided tape (carpet tape is my preference) - any slight bowing will screw up depth-critical stuff, and the tape makes sure it is all flat.
But first, use a sacrificial bed and make sure it is square to the Z-axis. I use half-inch perspex which was fly cut in situ. Good stuff for wiping up oil spills (you'll be wanting to use oil as a lubricant too, if you want your cutters to last any time).
[My mill is a Sable 2015 so although quite old relatively it is still recognisable as the same thing.]