I've never seen the hole size choice before. That must be because as soon as I upload a Gerber, it detects the answer and removes that dialog detail.
However, if I want to answer the question "is it still $4.90 for 0.25mm?", it seems the price stays as $0.00 until I upload an actual gerber.
So it seems the only way to find out is to create some gerbers having different minimum via sizes.