A bevel tip is pretty good for QFN with the wraparound sidepads. I tend to use bevel tip or knife tip for handsoldering and fixing the bridges on QFN.
If hot air reflow, I like to pre tin the pads similar to HowardLong. But I find I can get enough of a bead of rosin flux on the pcb that I don't have to bother explicitly fluxing the chip. This is using a pointy plastic tipped syringe, not a felt tip pen. The one pearl I can offer is that if you don't put enough solder on the center pad, the chip will suck to the pcb and won't auto-center. I prefer the mistake of putting too much solder on the center pad, and just squishing the chip down with tweezers while reflowing. Once it flows, let go, and the chip will center. Any excess solder will have squeezed out and balled up (and possibly bridged) to some of the outer pads, which necessitates post hot-air inspection and rework with the iron. So I don't think your stencil/oven result was a disaster, at all. If the chips were centered, you did fine in my book.
It is not always necessary to solder the center pad on a microcontroller. If I can omit the center pad, I find it is usually easier just to hand solder the pads. Here, I much prefer the knife tip. One of the reasons is you can use the tip as a probe to hold the chip down while adjusting it with the tweezers.
I've just hand-soldered 50 chips (no center pad), and it's been a few months. So I have been paying particular attention while relearning how to do this.
After fluxing and placing the chip
1. Push the chip roughly into place with the tweezers.
2. Pin it down with the iron tip (this is one reason why I prefer knife tip for this... pointy tip, no solder blob left on the chip, no overheating the chip.)
3. Focus on a single pad. For me it is the front right pad.
4. While pinning the chip down with the iron tip, I adjust the chip with tweezers until that one single pad is lined up right. (I tilt the microscope forwards by about 10 degrees so I can see the side pad is centered on the pcb pad. )
5. When it looks right, I switch implements. I pin the chip down with the tweezers, then I can remove the iron tip
6. I solder the single front right pad with the tip of the knife, bringing the tinned tip to the fluxed pads.
7. Solder the front left pad, tweaking the chip as necessary, to straighten it out. You can even walk the chip up or down by reflowing either end, if you got it grossly too far up/down.
8. Pin with tweezers, again, and drag solder the entire row/side.
After that side is down, then it's just a matter of drag soldering the other 3 sides. I turn the pcb for each row, so that I get the same view into the joints. If you got the chip too far out of whack and some of the connections are just not taking, you can hit the thing with hot air and watch it pop into place.