They're required for the larger Cyclone II part in the same package, but I've never actually seen that part used on a board like this. I think whoever made these boards just blindly installed the entire BOM without questioning whether those jumpers were actually needed. I ran into this recently with low volume production product a friend of mine designed, the company they had build them installed a bunch of extra parts that weren't supposed to be there which resulted in a lot of extra troubleshooting time from me. They had populated a buck regulator but then also populated the jumper that completely bypasses the regulator and a bunch of other bits, it was obvious they never even looked at the circuit, just built it and ignored all of the "do not fit" notes.