What most likely happened is that people cloned the FT232 solely to take advantage of FTDI's (obviously, generously provided for free) drivers which were of very high quality and much better than the buggy junk which Prolific produced (which also had weird limitations e.g. no drivers after win7 for the original PL2303).
FTDI were completely entitled to prevent the use of their drivers with these fake chips.
I've expressed the same before and I fully agree.
One of the major benefits of using FTDI products was, and still is, their drivers (especially on Windows, drivers for the rest of supported OSs being mainly based on libusb and not particularly interesting.)
But writing good and robust drivers on Windows was really hard (and still kind of is, even though this has slightly improved), and the WHQL certification is painful and expensive, you get all this for free with FTDI.
Their major mistake was probably to have, at some point, made their drivers brick fake devices. Customers were furious because that basically "killed" their products. FTDI could have just decided to detect and stop supporting fake devices with their drivers - that would have been enough to seriously harm the "cloners" (since, as you said, they are mainly interested in leveraging FTDI's drivers), and customers could not have said that FTDI killed anything. It would also have made it much clearer who was at fault... FTDI were entitled to do something about fake chips, but not this. This decision was probably one of the worst they've ever taken and it has harmed them tremendously. This story still bites them, and has likely harmed them much more than it has harmed counterfeiters, which was certainly not the point.
As to counterfeiting, in itself it's an offense in most countries that I know of, so there shouldn't be much point in defending it in any form.
China's tolerance towards counterfeiting should, IMO, stop. The chinese government should definitely do something about it if they want to change the image China still bears.
For those trying to say that FTDI products are not even good, why even counterfeit/clone them then? Come on. This is just completely dishonest.