If this is for FDM 3D prints
Just to confirm, FDM as I understood it when I searched online, is just basic 3D printing and not the filament type, correct?
If so, then yes, this would be for a standard 3D print (most likely using PLA).
Maybe something you can dispense with a blunt needle and syringe?
I thought of this already and thought it would be perfect, however, I think trying to push vertically on the syringe plunger while trying to fill in the small print would be difficult; especially if I'm under a microscope trying to keep the liquid in the text region.
PS. you can get pigments that can be added to clear epoxy.
I didn't think of this.
Providing the epoxy is liquid enough to flow and self levels but not too thin that it seeps into the 3D printed cracks (as you pointed out), then maybe the initial idea of using UV curing epoxy is the solution. It would also give me a good reason to buy a UV oven, although a quick search for UV epoxy showed they come with a UV light. If I go with UV epoxy, I'll have to research this a bit as I know little about it.
Also, this isn't for production; just one off stuff. In the past I've printed stuff with extruded text. Recently I've wanted to do recessed text, and thought it blend in too much due to being the same color. Filling it with a different color (I think) would enhance it.