I think that it was a fault made by their DFM preparation operator and this is surely made by accident because I don't see any reason that makes them do such error especially with an available part.
I advice you to check the "DFM Analysis" result of your assembly order just after placing your order and there you can spot if there is any thing wrong like missed part or wrong orientation, at least this is what I do to prevent any surprises because if you spot any issue you still can fix it because assembly Data are prepared as soon as you place your order but stays there until PCB manufacturing gets finished.


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You have mentioned that you've been a loyal customer to them so I wonder if this is the first accident you are facing with this supplier or it was a repetitive problems, in case this is the first time then i advice you to think twice before switching to another supplier.