For cleaning stencils I use IPA and kimwipes, with paper towels on the bench to capture excess. I only do low volume, and use GC10 paste. Sometimes I'll also use Electrolube SSC if I think it needs extra cleaning, and some canned compressed air to ensure any small apertures are cleared.
I don't think leaded/lead-free will make as much difference as the type of flux. I guess the two go hand-in-hand, but you'd need to be more specific about exact paste type if that is your concern.