Since the Unified Engineering firmware exposes offsets and gains for left and right TC channels, I decided to take a closer look at these before tossing this thing out a window.
With a third TC mounted between and at the same height as the chamber TCs, I adjusted the offsets on a cold chamber, then adjusted the gains with temp set to 200C. With this simple adjustment, tracking was perfect between left, right and the third TC.
The real problem with IR, especially with a chamber this small, is deciding upon a reference board on which to set up a profile. Without stirring the hot air, the IR has too many variables, from reflective gold to board density (plane layers), etc.
I now think the oven can be put to pretty good use, once you set up a profile based on the needs of the paste AND the characteristics of your reference board. Repeated assemblies of the same type should be a breeze, provided chamber uniformity (i.e. size) is considered.
Thanks for you reply but I've gone ahead and ignored left to right delta for the moment. I think there are bigger fish to fry ... ok, bake