Also note that when changing the input hybrid, there might be need to do an adjustment of the precharge offset. I am not sure if this is done during power up - it might need to be triggered by hand or an extra calibration step.
It passed self test and autocal with the swapped hybrid. The SM suggests only to adjust A2R113 if HW error and Auxerr=16.
To check for the noise source, the interesting ranges are more the 3 V and 30 mV range. The 30 mV range is mainly testing the input amplifier, the 3 V range is more influenced by the ADC and less be the amplifier. If really needed one could test the ADC alone by removing the jumper JM101. Also looking at data with and without autozero and different integration would help - as a side effect you could find comparable data in the thread about the noise comparison thread.
If precharge is a problem mainly the mode with active autozero should be influenced.
There's a definite negative offset when AZ is on. Readings are quite wild with AZ off. 3V and 30mV ranges behave the same.
I'm going to take another look at the input amplifier section.
Whilst i was waiting for the readings to be collected i took a little closer look at the mod in Dave's 3457a.
R216 511K changed to 49K9 1%
R217 511K actually 510K
Rx01 N/A added 30K1 1% Pin 9 U216 to +15V
Rx02 N/A added 200K 1% Pin 13 U216 to +15V
Rev A, B and C of the A2 board are in the SM i have and there's no notes regarding these changes that i can see.