I believe he's saying that his cluster of high-end linux systems is able to automatically do things in parallel and quickly, that in a typical individual PC based environment take a lot of manual effort (and time) to accomplish. And that therefore, his company would be very foolish to give up those linux systems just because a vendor thinks that a windows-only tool is better.
What's unsaid (and isn't really relevant) is this is probably due to some linux wizard having set this up. Using linux doesn't automatically get you such improvements, and using windows doesn't mean that you couldn't do similar things given (perhaps) an equivalent windows wizard. Meanwhile, he's ahead of his competitor and not inclined to change, just to get the bells and whistles of VS.
The Arduino's "use external editor" feature works really nicely, for such a simple implementation, BTW. Whenever I need heavy editing features, I turn it on and use EMACS for editing my "sketch", with the Arduino IDE reduced to a one-click build/upload tool...