SoCs don't generally have generic gigabit transcievers in the same way that FPGAs do. Even if it did, few CPUs could keep up with that data rate in a "bit banging" mode, at least if you want it to do anything else. Your best bet is to find a higher level protocol that the SoC supports -- PCIe, USB3, MIPI camera interface, gigabit ethernet, or whatever. Then have the FPGA implement that protocol with its high speed transceiver.