I corrected this back to the DS, per your instructions. I thought that PCB.Wiz had suggested these values, over the DS, in his prior post. Maybe I did not understand what he meant?
Yes, the 100nF data sheet value is 'quite large' in this context. If we assume a 100k RFB inside the 5351A osc, then that gives a tau of 10ms, for stable operation, which is slower than most OSC start up.
I've seen a better 1nF value used, which drops the bias stabilization time to less than most Osc startups..
but there's no point in using a variable resistor here, just go for a fixed resistor divider providing about 1 V peak to peak - and with an impedance of few kΩ (the datasheet does not specify the impedance of the XA input, unfortunately).
This is just a matter of my personal preference and a little trick that I know... SMD1206 components will bridge the standard 2.54mm pin spacing that the VR uses. So, I can drop in resistors, if decide to.
Trim pot footprint I would consider large here - this is a sensitive node and small area matters.
The divider needs to be low impedance, but not too low that it strains the TCXO out.
As a ballpark, if you select 0pF register C loading inside Si5351A, a 5pF circuit loading and 1k net impedance is a tau of 5ns
Most 'Clipped sine' outputs have a tau of appx Period/4, so are better described as well filters square waves.
eg if you pick 1k from CMOS out and 470 to GND, Vo is 1.055V p-p and that has a 5pF tau of sub 2ns and it loads the OSC to ~2.2mA
If you are driving a AC coupled XTAL amplifier, a finite rise time is actually helpful.
I would put a multi-turn trim pot footprint on the TCXO pin1 which can be VC of a VCTCXO. (or simply omitted if you enable from your MCU)
re 1V p-p :
Thank you so much for pointing that out. I just totally missed it. That scraps the board, I guess - no way to bodge it.
Don't be afraid to dead-bug and Manhattan wire to test things.

You can cut traces and even bend up single pins, and I've used the fine strands from inside ribbon cable, to wire fine parts for
measurement.
Good thing it was only $3.05.
I know that I own the mistake, because this detail is in the datasheet. However, isn't this oddly engineered? I would have never expected that XA's voltage in would not be equal to Vdd. And, if it is an unique engineering point, maybe it could have been more prominently highlighted in the text?
I've no idea what the actual damage value is here.
One test you could try, is to direct feed the XA to an output pin, and check for ~50% duty cycle.
It may be that SiLabs focus on the Xtal Amplifier linear region, and a classic class A N-MOSFET current fed Xtal oscillator, has ~ 1V p-p normally operating.
Addit:
... so I just made note that I would likely prefer a 27MHz, all things (cost) being equal.
keep in mind SiLabs spec'd
Crystal values of 25~27MHz to keep their oscillator design and testing simple, but the CMOS design can actually accept a far wider driven clock range.
Some notes here
https://www.simonsdialogs.com/2018/11/si5351a-any-frequency-cmos-clock-generator-and-vco-specifications-myths-and-truth/If looking for stable oscillators, by far the most common stable value [25~27MHz] is 26MHz, driven by the massive GPS market.
That's why the first part code released for the new ECS-TXO-20CSMV-AC-xx is ECS-TXO-20CSMV-AC-260-AY-TR (26MHz)
That said, I see Digikey do show a single part code for 27MHz TCXO small package, so you can test something : TG2016SMN 27.0000M-MCGNNM3
The ECS-TXO-20CSMV-AC-260-AY-TR is cheaper, but it can be useful comparing different parts. **
Addit 2:
I found the way-back post from NT7S comparing different vendors TCXOs, gives good clues of what to look out for.
https://nt7s.com/2016/04/si5351a-breakout-board-tcxo-upgrade/I see NT7S has qualified two TCXO's in Mar 2021 : Jauch Quartz O 25,0-JT32C-A-K-3,3-LF or Abracon ASTX-H11-25.000MHZ-T