I'm running Quartus II v13.0 under Win7x64 and have not had any issues with it whatsoever that I recall. It's rock solid stable, it does what it's supposed to do, it works just as well now as it did when it was the newest thing around. It's not a problem to have multiple versions installed although I do find it annoying that newer versions drop support for older parts. I'll never understand the obsession some people seem to have with new, must have the latest and greatest, everything older sucks because it's old, I'm forced to use Win10 at work and I absolutely despise it, horrible turd of an operating system that I feel like is constantly fighting with me and pushing MS "apps" and services, uhg! Well whatever, the whole point of this thread is to play with old retro stuff and even the lowly Cyclone II is still a very powerful part. I have a couple of much higher end FPGA boards and feel that I'm generally wasting them because I've barely scratched the surface of what they can do. I'm just not that great of an FPGA developer and most of my interest is in replicating retro hardware. I've had a lot of fun pushing these little Cyclone II boards as far as I can.
There is no 5V on the headers for some reason, but there is a pair of pads next to the power input jack that are connected to that. I have a board in the works that needs 5V and for that I'm just placing a small DC-DC converter on the daughterboard like I did to get the +/-15V for the vector output.