Personally, I like the green protoboards. Stick with them.
Also since you are driving both regulators, the current capabilities of both the transformer and the rectifier bridge must be large enough for both (i.e. greater than 2A). The capacitance of the filter cap must be large enough for both also. You might actually be better off with two before the regulators.
Bridge Rectifier is 6A and the one large cap is 6800uf . When I redo the new board Ill put 2x2200uf cap 35v per side.
I think that is a bad idea. Stay with the 6800uF 35V capacitor on the input and use 100uF caps on the output.
At full load, you may actually need something bigger than 6800uF depending on the transformer and rectifier bridge voltages.
If you already have 2200uF caps, leave room to add one later on if you find that the voltage is too low.
I see nothing wrong with your original design other than the transformer is under sized for what is possible.
A 3-5A CT transformer would maximize your output. But, what you have is fine.
With that, you probably should keep an eye on the 6A rectifier. It may or may not get hot without a heatsink also.
I show LEDs on the outputs which provide two functions. First, they indicate the power is ON.
Second and more important, they provide a minimum for each regulator to work properly.
YOU HAVE NO CURRENT LIMITING. Careful or you may have a BAD day. Not ideal, but okay as minimal supply.
Stay with:

Or with a CT transformer you could reduce the voltage drop (i.e. heating) of the 5V regulator:
