Or just not make them at all!
I make dead-bug protos up to about 100 components per board. Schematic capture and layout take more time than diving in and doing it, plus I learn more in the process, bringing up the circuit a piece at a time.
Conversely, if the layout time isn't taking longer than the proto, that's a clear indication that your circuit (or your design method..) is not high enough performance to require an on-board proto, and the solderless breadboard will do fine.
If you are dealing with larger circuits than that, you need to reconsider your prototype flow. Break it down into smaller, better-specified subcircuits. (Helps as a design methodology, too!) Get dev boards instead of laying everything out in solder. If it's non-critical in terms of performance, do it on solderless breadboard instead.
Alternately, study SPICE simulation or the like -- SPICE is probably harder to get right than a breadboard*, but it's a hell of a lot easier to change out parts in!
*It's tricky, because you can easily poke down some components and wires and get a believable result; but, as they say, it takes two to lie: one to tell it, and one to believe it. Mind, it's not that the computer is lying, it's more insidious than that: it's only telling you something about the circuit you've entered. It is up to you, and only you, to construct a circuit that is realistic and representative, and to check and verify the models used are also realistic. Meanwhile, you have to deal with all the vagaries of a numerical solver: stability, accuracy, speed...
Tim