I think the problem is you are trying to dictate layout in the schematic, this is not typically done to any degree more than putting a note on the schematic or some document so the person doing the layout knows to lay it out like you want.
In terms of connection, all the varieties of ways those capacitors can be layed out are equvalent, in terms of connection your two net labels are directly connected and reference therefore the same set of connections, what is connected to one, is connected to the other. But in terms of layout and wrangling electrons where you want them, you might indeed have more demands. A trivial example is decoupling caps being "near" to an IC, the schematic does not say this, it's extra information, usually unsaid because the layout designer just knows, but they could put that cap on some long and windy trace all the way over the other edge of the board and the net connectivity test would still pass.
One situation where what you want is common for example is splitting your ground into digital and analog grounds, they are both ground at the supply eventually but you want them separate until some specific point, so you create as well as your real "Gnd" net labels an "AGnd" for the analog things and connect the analog one to the real one via a component (ferrite, 0-ohm link, solder bridge...) to separate them.
If a component to seperate is undesirable, you can always put in a placeholder component and then replace it by a trace in the pcb layout as the last thing you do, or use a component with two pins and a pattern that has two very small surface pads and a copper line between them as a faux-trace, it would be flagged as a drc fail is all.