Good news: TR9 was the issue! Today I've received the required parts, the BD241 and the 5.5V supercap, soldered them in and everything works fine again! Voltages around TR9 are what they should and the patch memory is retained after power down.
So happy with this result, thank you very much for helping out, learned a lot from this quest and your suggestions on how to trace down the issue. Great to be able to use this synth again, its vector synthesis produces such a unique sound..!
However, I do wonder if I could have spotted the faulty TR9 sooner in the process? I mean, without taking TR9 out of circuit, using a multimeter with diode setting? @Elecdonia you mentioned the 'diode drop voltages of only 300mV' are an indication; could you please explain?