Maybe it is stupid but next time you should turn it on and then slowly going up with the AC power voltage by using a TRIAC between the unit and the plug in the wall...
When you are going up with the voltage check where the current is flowing/temperature is going up and which device is not doing his job
Just my 2 cents, I have no experience with the Fluke 5200a but it would be my next step after replacing the fried components once again.