I would consider the transformers the main suspects for a beeping noise. There are a few things that can make tranformer noise worse:
- added DC background magnetization / asymmetric drive
- increased drive voltage, so the core gets closer to saturation
- the winding getting mechanically loose so it can move / resonate
- rubber used for acoustic isolation getting hard.
Magnetistriction can produce twice the frequency of the voltage - so this would be some 6 kHz.
At least things like loose coils at the transformer can be fixed and some glue can also help to dampen mechnical resonances.