Have you tried disconnecting the power supply outputs from the amplifier, 40V is suspiciously like the amplifier has a fault, and is drawing excess current. The current sense resistors, were they replaced, as they can fail high resistance, slightly high in value, so there is always current limiting. Other than that D12. D13, D14 are all suspect, along with R17, R18 and R19, as they all might have had stress when the supply failed. If you have not replaced C17, D3 and R3, or at least checked out of circuit, do so, so that you can have a chip power supply once operating.
If it still is not working check secondary side diodes D6 to D10, out of circuit, and the capacitors C25 to C28. Capacitors not only for shorts, check capacitance and ESR, or simply replace with new if unable to test them.