Poked around some more.
The LTC1650 seems to be the DAC in charge of setting the voltage. Test pad right next to it (labeled V Set) measures ~0.146v per volt set on the screen. Tested this @ 15, 10, 5, 2.5 & 1 volt, lined up nicely. Assuming its fine up to that point the fault has to be in the sea of op amps between there and the AD825s that lead up to the LT1166. Spent some time looking into the other test pads and trying to figure out what they correlate with while I'm tracing out the whole mess. Took a bunch of measurements at various settings around the DG409, test pad near the top (orange line) seems to be a fixed 2.440v. Pin 11 on the DG409 I suspect has to do current measurement in to ADC.
Guess its either follow from the LT1166 up or the V set pad down.