Well then, they aren't uneven, but they look nothing like the sawtooth shape they show in the manual. They look more like thin triangle spikes with lots of dead space in between. I did have to use an attenuator probe given that the signals are over 200V p-p, not sure if that is why. It also seems to be temperature related, I let it heat up for about an hour and the spot is gone.
The trace is still oddly fat too, over half a small division wide. EDIT WHILE POSTING: dirty voltage range switch is causing noise, that's why it's fat.
EDIT AGAIN: WOAH! It's now making a faint high pitch squealing when I input a signal! I thought it was the flyback making that noise but obviosly not. It's coming from the modules, it might be the suspect component.