Something doesn't add up in your description, or I am not understanding it correctly. Are you saying that if you have disconnected the -12V output from the P/S and you have disconnected all the -12V supply wires to the boards, you still have a short? On which wires - one of them, all of them?
Would point to a wiring problem. Jiggle all of the wires while an ohmmeter is attached.
But my read of the schematic shows the -12V lines different than the connections you listed (AD, T, A, H, AN, CC). My schematic shows the following: AD to A1, K to A5, D to A2, AN to A4, CC to A3, H to A6.
Normally when I have a short on a power rail, I first isolate the P/S and check the output with an ohmmeter. If there is a short, the problem is on the P/S. If the short goes away, then the problem is on the other boards. I reattach the P/S and leave an ohmmeter hooked up across the P/S output (which reads zero). Then, one by one, I start removing the connections to the various boards until the ohmmeter moves off of zero. It is somewhat easy to do this when there is a backplane and the boards all plug in so you can simply lift the boards out of their slots, but in your case, you have to disconnect wires. When the short goes away, you've found the offending board and it is almost something like a shorted tantalum capacitor that's the culprit.
There is always the possibility that the service manual/schematic is incorrect too. I would leave the ohmmeter attached at your connection H and then I would start pulling ALL the connection points on a board while watching the meter.