Could you highlight the relevant section in that 8-page doc if you don't mind?
For sure, parasitic-created elements will impact more for some use cases, or if you do very unusual things (like strap the balun right against the conductive metalwork, without any gap/insulating shim/insulating standoff, etc.). Or if you didn't insulate the balanced end. But these are very solvable things, and once mentioned, it would be clear to a newcomer that the device should not be placed against metalwork, and that the balanced end needs insulating.
If it were an unsolvable problem, then Minicircuits (and others) would obviously not sell baluns in metal enclosures. Didn't every high-end Hi-Fi radio receiver (folded steel enclosures) also contain them, for converting the 300 ohm balanced antenna input to 75 ohm?